Plant MITE

SE0610082

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11060
Thellungiella halophila
SE0610082
Tc1/Mariner
St5
scaffold_8:2175259-2175504
TA
TACTCCCTCCGTTTCATAATAAGTGTCGTTTTAGATTTCAT

Secondary structure and sequence

TSD TIR

5'

3'

                               ---  G             TTTCAAAAATAGTGTAATTCTGCATTTTCAATGTAACTTTTTACTCTTATTTCCTGTTTTATCCCTCATTTAAA
TACTCCCTCCGTTTCATAATAAGTGTCGTTT   TA ATTTCATTTTTTG                                                                          
|||||||||||||||||||||||||||||||   || |||||||||||||                                                                          G
ATGAGGGAGGCAAAGTATTATTCACAGTAAG   GT TAAAGTGTGTATA                                                                          
                               ACT  G             ATTTTTTAATTCTTTTATATGTTTATATAGGGATTAATTATATAAAATATTGTAAATTAATGTTTATAATATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0610082

TACTCCCTCCGTTTCATAATAAGTGTCGTTTTAGATTTCATTTTTTGTTTCAAAAATAGTGTAATTCTGCATTTTCAATGTAACTTTTTACTCTTATTTCCTGTTTTATCCCTCATTTAAAGATTATAATATTTGTAATTAAATGTTATAAAATATATTAATTAGGGATATATTTGTATATTTTCTTAATTTTTTAATATGTGTGAAATGTGTCAGAATGACACTTATTATGAAACGGAGGGAGTA

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