SE0650085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11063
  • Thellungiella halophila
  • SE0650085
  • PIF/harbinger
  • To16
  • scaffold_4:8222500-8222743
  • TTA
  • AGAGCATCTCCATTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                TG      A --  TGAGTCTTTTAGGGATAGTTTAGTATTTTTTTGGAAAGAGAAAAAAAATTAAAACATTAAAAGCAAAAAAAATCCAACCAATCACAGCCTTC
  AGAGCATCTCCATTAG  TTATTC C  TA                                                                                            
  ||||||||||||||||  |||||| |  ||                                                                                            C
  TCTCGTAGAGGTAATC  TCAAAA A  TG                                                                                            
AT                --      - AT  GTCTAAAACCGTGTTTTTGAATTCATAAAAGAGTTTTAAAACTACCTAGCGAGGAATATATTCTCTATTTCTCTAACAGAAAATGCGGTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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