SE0650090

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11068
  • Thellungiella halophila
  • SE0650090
  • PIF/harbinger
  • To27
  • scaffold_3:14817695-14818355
  • CTG
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
      C    G  GGAGGTGGACTTAGCACCCCTAATTAGCTAGGCTCATCTTGAATAATAAGGCTCATGGATCAAGTCAACAGAAGCCCAACCAAAGTCAACAAATCATGTCAGCATGGCCCCGCCAAATCATCATCATCACAACGCCGATCTACAGTACGCGGAGCCGAGCAGAACCTGATACGTGTAGGAGCAGTTCGTCTACAGTGGCCTATCTGCGCAAGTAGCTCGGCGAAGGACCATCATCACTCGCCGCAGAGTGGTTCAAACGTGCGGCTCGAGATGCCATACCCGCGGAATACACTCCTGCCACGTCGTCCCGATTTAGAGGA
       TGGT TT                                                                                                                                                                                                                                                                                                                                
       |||| ||                                                                                                                                                                                                                                                                                                                                 
       ACTA GG                                                                                                                                                                                                                                                                                                                                
GTCGACA    -  AACTCTAGTGATTCACACAAATACTTTACAATTCACACAAACTACTACTCATACCCCGCTATAAAGGTAAATTATTCTTACTAAATCAAACCTCCTTCTTTTCTTCAGTCCAGCCTTGGCATACGCCAGACTATTTCTCTCTTATAAATCTTAAAGCTTGATTCAGACTTCTCTCAAGTCAAGCCGCAAGATTTCTAGACAATATCTCTCGAGCCAGACTCTCTGTTCTCAAAAATACATCTTTCTCTCACATTATTTAAGGCCTAAGGCAGTATTTACTAGATACTTCTCATAAATATCGCCTTCAACCATCTGCTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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