SE3750001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11069
  • Solanum lycopersicum
  • SE3750001
  • PIF/harbinger
  • To1
  • SL2.40ch09:35386784-35387454
  • TAA
  • GGCCCGTTTGGCCATAGATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAG   --C         A                 ATTT   GAAAAACTTGGCAAATAGTATTTGTCCGTACACTTTGCCATTATTTGGCAAATATTTTTGACAAATATCCCAAATTCCCAAGTACTAATTTTTTTTAGTATTTGGGCCAATCTCATTACTTGAGATCTTTTATAAATTGAAATTTTACCCCAAACTTTTATCTTTTACAAAAACACCCTCTATAGTTGTTGTTTACGTTGTATTACATGATTTTTTACATTAATTCCAAAGAAATGGTGAAATATCCAGTGAATGTTAAATGATAATATGGTTATTGATGAAAATGATGAATAAT
    GGC   CGTTTGGCC TAGATTTCCCAAATAAT    GGG                                                                                                                                                                                                                                                                                                       
    |||   ||||||||| |||||||||||||||||    |||                                                                                                                                                                                                                                                                                                       C
    TCG   GCAAACCGG ATCTAAAGGTTTATAAG    AAC                                                                                                                                                                                                                                                                                                       
  AA   ATC         C                 ----   TGTTTATAATAAACACACTTTTAAACCCACTTTAAAGTGGTACACAAACCGGTATGATAGTATTATAAACCCTTTATATAAAGTGAAAAATTCTTTTTATACTAAATATGGGTATTCAAAATTATTATAGTTTTGATTGGTATTCAAATATAATGTTCAATTAACCTAGAAACAATGTTGTTATTGTTTATCACAGGTACTGTGATTTCGTTATACCACTAAACCTCACTCACGTTGTTTGTAGTAAAGTATGTAGCACTTCATCTGTTTGGTGTACTGAAACAATAGAACTCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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