Plant MITE

SE3720003

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11071
Solanum lycopersicum
SE3720003
Mutator
M2
SL2.40ch12:3698361-3698661
TTATATAAA
TTATATAAAGGGATAATGCACAAGTACCCCTTCAACCTATGCCCGGAATCCCAGAGACACACTTATACTATACTAAGGTCCTATTACCCTTGAACTTATTTTTAAGTAATTTTCTACCCCTTTTTGGCCTATGTGACACTAGATTG

Secondary structure and sequence

TSD TIR

5'

3'

         A                       C        C    A   C          CT        ACT                --  A         -TA                T   T          A     GA   GAC
 TTATATAA GGGATAATGCACAAGTACCCCTT AACCTATG CCGG ATC CAGAGACACA  TATACTAT   AAGGTCCTATTACCCT  TG ACTTATTTT   AGTAATTTTCTACCCC TTT GGCCTATGTG CACTA  TTG   
 |||||||| ||||||||||||||||||||||| |||||||| |||| ||| ||||||||||  ||||||||   ||||||||||||||||  || |||||||||   |||||||||||||||| ||| |||||||||| |||||  |||    
 AATATATT CCCTATTACGTGTTCATGGGGAA TTGGATAC GGCT TAG GTCTTTGTGT  ATATGATA   TTCCAGGATAATGGGG  AC TGAATAAAA   TTATTAAAAGATGGGG AAA CCGGATACAC GTGAT  AAC   
A        -                       C        A    A   A          AC        CAC                GG  A         TAA                T   C          C     AG   ACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720003

TTATATAAAGGGATAATGCACAAGTACCCCTTCAACCTATGCCCGGAATCCCAGAGACACACTTATACTATACTAAGGTCCTATTACCCTTGAACTTATTTTTAAGTAATTTTCTACCCCTTTTTGGCCTATGTGACACTAGATTGGACCCACAAGATAGTGCCACATAGGCCCAAATGGGGTAGAAAATTATTAATAAAATAAGTACAGGGGGGTAATAGGACCTTCACATAGTATACATGTGTTTCTGAGATATCGGACATAGGTTCAAGGGGTACTTGTGCATTATCCCTTATATAAA

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