SE3730004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11072
  • Solanum lycopersicum
  • SE3730004
  • hAT
  • Hat2
  • SL2.40ch08:48767703-48767907
  • GTAATAAT
  • ATCAGTGGCGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAATA              CACATGT   G  GGGGTGTCGACCGACACCCCTTCGTCGGAAAATTACATTATGTAGTTAGAATAAAAATATTTTTTATGTATAT
      ATCAGTGGCGGAGC       AGT AA                                                                         
      ||||||||||||||       ||| ||                                                                         A
      TGGTCACCGCCTCG       ATC TT                                                                         
TAATAA              -------   -  AAAAAAGATTCCCCACAGTTTTAGATTTCTTTAATTTAGCACATTTTCGGTTCCTCACAGTTATACATTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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