SE3720008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11076
  • Solanum lycopersicum
  • SE3720008
  • Mutator
  • M2
  • SL2.40ch06:32403431-32403739
  • TATTTTAAA
  • AGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCAAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTAA           C                        A                                          TCCCCTGAACTTATTTTATTAA                  CGA              TC   -------T     C   GA
        AGGGATAATGC CAAGTACCCCCTCAACCTATGCCC AAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTAC                      TAATTTTTTACCCCTTTT   CCTATGTGGCACTA  TTG        GGGTC AAC  
        ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||   ||||||||||||||  |||        ||||| |||   
        TCCCTATTACG GTTCATGGGGGAGTTGGATACGGG TTTAGAGTCTCTGTGTGAATATGATATGATTCCAGGATAATG                      ATTAAAGGATGGGGAAAA   GGATGCACCGTGAT  AAC        TTCAG TTG  
AAATTTTA           T                        C                                          -------------------TTC                  ATC              CA   TTTTTTTT     -   GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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