SE3720013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11081
  • Solanum lycopersicum
  • SE3720013
  • Mutator
  • M7
  • SL2.40ch01:56941882-56942292
  • TAAAATATA
  • TAGGGAAAATGACAGAATTTTACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATA     A   T       TT      --TTAAACTCTCTT         -A    C   T     -----     --     CA     T      - T     ATCG   TAATGTATCAGCGTATCAAATGAATGTATTTTGCACATCAGATTAATGTATTTTGTGCATCTGATTAATGTATATCGCACATCAGATTAGTGTATCA
       TAGGG AAA GACAGAA  TTACAT              ATTACCATT  TCCC TAT AGTTT     TACAA  ATCCT  AAATC TTTATT T TACGT    GAT                                                                                                 
       ||||| ||| |||||||  ||||||              |||||||||  |||| ||| |||||     |||||  |||||  ||||| |||||| | |||||    |||                                                                                                  
       ATCCC TTT CTGTTTT  AGTGTA              TAATGGTAA  AGGG ATA TTAAA     ATGTT  TAGGA  TTTAG TATGTT T TATAT    TCG                                                                                                 
ATATAAG     G   T       -T      TGAAAATTCCGTTT         AC    A   T     TATTA     TT     AG     C      A -     ----   TAACTATGTAATTGTACTACGCGTTCTATGTAATTAGCAATTCATTCTATGTAATATAAAATATGTGCTATGTGATTAGACTACATGTAAAATATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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