SE3720014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11082
  • Solanum lycopersicum
  • SE3720014
  • Mutator
  • M6
  • SL2.40ch07:63793076-63793776
  • TAAATTATA
  • TAGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATTA     AT      ----       ---  CAAATTAATAATATAAAATAAATAT   GACTACCGTTTGATTAATTTGTGTTTCATAGCAAATTGTTTGTCAGTCGCTCTCTCCCTCATTTTCTCGGTCGCCACTCTCCCTCTCTCGCTCGCCCCCTTCGCTCGCCTCTCTATCTCTTTATACAATAGAATTGTATAAATTGTGTTTCTAATTGTATAAAGCGAAATTTTTTTTGTATATACGTACACATGCAAATACATATATCTCCATCTTATACACTTATAATTATACAATAAAAGTTTCCCTGCCCAAGTTCTTTTGTTTTCCTCTCTTTCTCGTTTTATACAAATTCAAATTGTA
       TAGGG  AATTGT    ATAGAAT   GA                         AGT                                                                                                                                                                                                                                                                                                               
       |||||  ||||||    |||||||   ||                         |||                                                                                                                                                                                                                                                                                                                
       ATCCC  TTGAAA    ATATCGT   TA                         TTT                                                                                                                                                                                                                                                                                                               
ATAATAA     -G      ATGT       TTG  -------------------------   AAAAAATGAAAATACGATATTGTTTCAAACATATTAACGAGAGGTATCGTTTGTATATATGCGTATTAAGCGATATGTATATGTTAACTTCGCTTCACGTATTTTGCTCTTTCTCTTACTTTGAACCCGTCTCTTAACATATTTTGCTTCATACATGTTACTTAACATATTAATATTCACATATCCTGTTAATATATGTTAAACTTAAACATATTTTGCTCTTTCCCTCTTTCCGTTTTCTCTGAACCCGTCCCTTATATGTTAACTTAGCTTAACATATTTTGCTCTTTCACTCTTTAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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