Plant MITE

SE3720015

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11083
Solanum lycopersicum
SE3720015
Mutator
M4
SL2.40ch02:36225631-36226354
AAAATAAAA
C

Secondary structure and sequence

TSD TIR

5'

3'

AAAATAAAAGGAAAA     A    ------  G -     AAAAATAATTAATTA    ---  A   -   TAATTTGATAATTACAAATTGTAGCTACATGTTATTTGAAGGAGAGAGGCAGGCGAGACTGGGAAAGAGAGGAGAAAGGCGAGAGAGAAGGGGAAAAAAGTGGGAGAAAGATGAATTGTATATGTATATTGGTTAGATAATTTTTTAATTATACATATGTAATTGAATATATGGCAAGAAAGATTGGGAGAGGGAGGAGAGAAGTGAGCGAGACTGGGAGAGAGAGGAGAGAGGCGAGCGAGATCGAGAGAGAGAGGAGAGAGGGCAGAGAATGGGAGAGAGGTGAATTCTATATGTATATAATTAT
               CTTTC CATA      TA C CACTT               CTCT   TC TAG TTA                                                                                                                                                                                                                                                                                                                   
               ||||| ||||      || | |||||               ||||   || ||| |||                                                                                                                                                                                                                                                                                                                   A
               AACCC TTTT      CC T TCTGT               TTGA   TG ATA ATT                                                                                                                                                                                                                                                                                                                   
        AAAATAA     -    AATGTG  - A     ---------------    ATA  -   A   AATGAGTAGTATCAATATCAAACGATATTAATTGTGAGAGCTGATTGTAATATGTAATTAATGCACCCGACTGAAGCTCAAACACATTAATCAATACAAACATATACATATTAAGCGGTCTTATATGTTTATTTATACATATTATATGTTTAAAAATTGGATATATGTATATGTTAAGTAGAGAGAGGGTGAGAGACGGGAGAGAGCGAGCGGAGAGAAGAGGGAGAGAGTTAGAGCGAGTTGAGAGAGGAGGGAGAGAGATAGAGTGAACGGTAAATATGTTTACATATACATATTATATGTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720015

AAAATAAAAGGAAAACTTTCACATATAGCCACTTAAAAATAATTAATTACTCTTCATAGTTATAATTTGATAATTACAAATTGTAGCTACATGTTATTTGAAGGAGAGAGGCAGGCGAGACTGGGAAAGAGAGGAGAAAGGCGAGAGAGAAGGGGAAAAAAGTGGGAGAAAGATGAATTGTATATGTATATTGGTTAGATAATTTTTTAATTATACATATGTAATTGAATATATGGCAAGAAAGATTGGGAGAGGGAGGAGAGAAGTGAGCGAGACTGGGAGAGAGAGGAGAGAGGCGAGCGAGATCGAGAGAGAGAGGAGAGAGGGCAGAGAATGGGAGAGAGGTGAATTCTATATGTATATAATTATATAATTGTATATTATACATATACATTTGTATAAATGGCAAGTGAGATAGAGAGAGGGAGGAGAGAGTTGAGCGAGATTGAGAGAGGGAGAAGAGAGGCGAGCGAGAGAGGGCAGAGAGTGGGAGAGAGATGAATTGTATATGTATATAGGTTAAAAATTTGTATATTATACATATTTATTTGTATATTCTGGCGAATTATACATATACAAACATAACTAATTACACAAACTCGAAGTCAGCCCACGTAATTAATGTATAATGTTAGTCGAGAGTGTTAATTATAGCAAACTATAACTATGATGAGTAATTAAATAGTATAAGTTTGTCTATCCGTGTAATTTTCCCAAAATAAAA

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