SE3720016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11084
  • Solanum lycopersicum
  • SE3720016
  • Mutator
  • M7
  • SL2.40ch06:36847914-36848276
  • TTTTTTTAT
  • GGGCAAAAGACAGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTTAT   C    -         CACA  C       --GTAAA     AAT    CC     A     -    -TGACA     G   CAAATGA    ATAATATA     TGATACATTAATCTGATGCGCGAGATACATTAATTATTAAGTATATTACATTTTATACATGATACACTAATTT
         GGG AAAA GACAGAAAT    TA TTTTGAG       ATTAC   TTGT  CTTAT AGTTT ATAA      AAAAT TCT       TACA        AGTGT                                                                         
         ||| |||| |||||||||    || |||||||       |||||   ||||  ||||| ||||| ||||      ||||| |||       ||||        |||||                                                                          
         TCC TTTT CTGTTTTTA    AT GAAATTC       TAATG   AATA  GAATA TCAAA TATT      TTTTA AGA       GTGT        TGGTT                                                                         
 TTTTTCTT   T    A         --AG  A       AAGAGAA     -GT    AA     A     A    TAAAAG     G   -ATAAAA    -------A     TAATTACATAGAGAATGTTGTTTAATTACATAGAGCGCATAGTTTAATTACATAGCACATATTTTATATGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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