SE3710017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11085
  • Solanum lycopersicum
  • SE3710017
  • Tc1/Mariner
  • St2
  • SL2.40ch05:20250904-20251182
  • TA
  • TACTCCCTCCGTCCCATTTTATGTGGCATCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
                  T              C     AACACGGAGTTTAAGAAATAAATGAAGACTTTGAATTGTTTATCAAATTGTCCTTCAAAAGTGGACTCACTTTTCTCTCTCCTCATAAATGTATTAAATT
TACTCCCTCCGTCCCATT TATGTGGCATCATT GACCC                                                                                                    
|||||||||||||||||| |||||||||||||| |||||                                                                                                    A
ATGAGGGAGGCAGGGTAA ATACACCGTGGTAA AGAAA                                                                                                    
                  C              A     AAACAGTTAGGGTTTTTTTTACAGTGTAAAGGAATATACCATTCATAAATTTCCATGTTAAGGAGAAAATGGGAACAACCAGGGTGAATTAAAATTTATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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