SE3720019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11087
  • Solanum lycopersicum
  • SE3720019
  • Mutator
  • M3
  • SL2.40ch09:63936283-63936755
  • TAAAGTGAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAA     GAGCAACATTCACATATAACAAACATAAAAATCATATTTGTATGTTATAACTATAGTTTGTATCATTGCGCCACATAACAAATTTTATGTTTGGCATGAAGCTTTTGATTTGTATAATTCTATAGATACATCCAATTTGATATAAATTGTTCAATTTTGTATAAATTCATTTATACATTGTAATTTGTAAAATAAAATACGTACTTGTATAACTATAAGAGTGTATAGG
    GTGAA                                                                                                                                                                                                                                     
    |||||                                                                                                                                                                                                                                     A
    AAGTG                                                                                                                                                                                                                                     
         AAATCCACTTAACATATTTTATTATTTAATTATTAAGTTTAATTTAAAATATTAGTATCAAATAAAATAACATCGAACGTCGTTTGTAAGGTAAAAAAGTAGACTAAACCATATATTAATCAGTAAAAGACATATGTTAATGAGTAAGCCGTATATTTACATATTTTACACAAACATAAACATATTTGGCTCTCTTTTACATATATGTTTATGTTTATTTATATAAAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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