SE3720023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11091
  • Solanum lycopersicum
  • SE3720023
  • Mutator
  • M8
  • SL2.40ch09:8903102-8903513
  • TTTTTTTAA
  • GGAAAAATTACATAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTTTTTAA     AA          TA             AATAATTAC    TT     ATACTTTTTATTTATTACCATTTATAACAATGCTATGTCAAATCTACAATATGAATTAAAAGTGAATTATGTATGCAATATATATGAATTATAATTGTTTTTTGAAATATATTATGTTTGTTTGTTAAAAATTTGACATATTGTATTATAA
          GGAAA  TTACATAAAT  GTACATTTTAATA         TGAT  TAGCA                                                                                                                                                       
          |||||  ||||||||||  |||||||||||||         ||||  |||||                                                                                                                                                       G
          CCTTT  AATGTATTTA  TAATGATTTTGTT         TTTT  ATAAA                                                                                                                                                       
AATTTTTTTC     -G          --             ---------    --     TGGTAAATATCATTATTATAGAAAAAAAGTGAACTAGTGAAAATTAAGTAAAAATTATGTTCAAATTATGTATAATGTTTATTGTTAAATAATAAGTATATATTATGTTTAAAATTATTACCTATTATGTAAATAGCGTGTAAAATTATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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