SE3720024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11092
  • Solanum lycopersicum
  • SE3720024
  • Mutator
  • M8
  • SL2.40ch12:46297570-46297981
  • AAATAATTA
  • AATAATTAGGAAAAATTACATGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
A   A      A   A  A       -      - TT TT      AATTACTGATTTTAGCGATACTTTTTGTTTATTACCACATATGCAATACTGTGATAAATCTGTAATATGTATTAAAAGTGAATTATGTATGCAATATATTTGAATTAAATTGTTTTTGAAATATCTTATGTTTGTTTGGTAAAAAATTGTCACATTGTATTAT
 AAT ATTAGG AAA TT CATGAAT TAATAC A  C  AAAAAT                                                                                                                                                                   
 ||| |||||| ||| || ||||||| |||||| |  |  ||||||                                                                                                                                                                    
 TTA TAATCC TTT AA GTATTTA ATGATA T  A  CTATTT                                                                                                                                                                   
A   A      C   G  C       T      C -- --      TTTTATAAATAGTAAATATCGTTATCGAAAAAAAAGAGTGAACTAGTAAAAATTAAGTAAATATTATGTTCAAATTATGTTAATGTTTTTTTGTTAAATTTTAAGTGTATATTATGTTCAAAATTACTACCTATTACGTAAATAGTGTGTAAAATTATATGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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