SE3720026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11094
  • Solanum lycopersicum
  • SE3720026
  • Mutator
  • M5
  • SL2.40ch07:3963224-3963535
  • TTTATATTT
  • TATATTTGAGAAAAAAGTTTGAAAAATATTTCAACTTTGGCCGAAATTGTTGTTACAATATCAAACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT    TTT       AA        A      C        C            T  A     A      --AT  C  ACCTTTTACCCACCTACACTATTTGATAGTATATTTTAAAGGTATATATGTACCTACGGGACACATTACTGTTTATA
   TATA   GAGAAAA  GTTTGAAA ATATTT AACTTTGG CGAAATTGTTGT AC ATATC AACTTT    GG GG                                                                             
   ||||   |||||||  |||||||| |||||| |||||||| |||||||||||| || ||||| ||||||    || ||                                                                             A
   ATAT   CTTTTTT  TAAACTTT TATAAA TTGAAACT GCTTTAACAACA TG TATGG TTGAAA    TA CT                                                                             
TTT    TTC       -A        A      C        A            T  C     A      CTTA  -  GAAAAATCAGTACGTGATAAAATATCACACAAGATTTCTATATATACACGAGTGCACCTGTATTTTTATAACGTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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