SE3720028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11096
  • Solanum lycopersicum
  • SE3720028
  • Mutator
  • M5
  • SL2.40ch09:5117674-5117986
  • TAAATCATA
  • GGGAAAAGGGTGTGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATCATA        G  G      TTTT   -                   ATTAC             ATT   A        -                                             TCT      -   TAC    -   AA
         GGGAAAAG GT TGAAAT    TTC AATTTTGGTCGAAATTGTT     GATATCAAATTTT   AAG ACTTTTTA CTCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGTCC   TGGACA CGT   TATT TAT  
         |||||||| || ||||||    ||| |||||||||||||||||||     |||||||||||||   ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||| |||   |||| |||   
         CCCTTTTT TA ACTTTA    AAG TTGAAATTAGCTTTAACAA     TTATGGTTTAAAA   TTC TGAAAAAT GGGGACGTGATAAGTTATTACATAAAATTTCCATATATATACGGG   GCCTGT GTA   ATAA GTA  
ATACTAAAA        G  G      -TAT   C                   CATTA             CCT   C        A                                             TTC      A   TTT    C   TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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