SE3720030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11098
  • Solanum lycopersicum
  • SE3720030
  • Mutator
  • M5
  • SL2.40ch04:54785516-54785826
  • TTTCTATTA
  • AGGGAAAAGAGTCTGAAAAATACTTCAACTTTGGCTCAAATTGTTGTTGCGATACCGAACTTTATAGAGACCTTTTACCCCTGCACTATTTAATAGTGTATTTTAAAAGTATATATGTGCTCACGTGGACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCTATT         A   T    A   -  TC          C          TGC     CGA  T  AT    -        C                             A        G  C           AATTACTAT  A  AT
        AGGGAAAAG GTC GAAA ATA CT  AACTTTGGCT AAATTGTTGT   GATAC   AC TT  AGAG ACCTTTTA CCCTGCACTATTTAATAGTGTATTTTAAA GTATATAT TG TCACGTGGACA         TT CA  
        ||||||||| ||| |||| ||| ||  |||||||||| ||||||||||   |||||   || ||  |||| |||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||         || ||   
        TCCCTTTTT CAG CTTT TAT GA  TTGAAACTGG TTTAACAACA   CTATG   TG AA  TTTC TGGAAAAT GGGACGTGATAAATTATCACATAAAATTT CATATATA AC GGTGCACCTGT         AA GT  
ATTATCAT         C   C    A   A  -C          C          TTA     ATC  T  CC    A        C                             C        A  A           ATTTTTTAT  C  AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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