SE3720032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11100
  • Solanum lycopersicum
  • SE3720032
  • Mutator
  • M6
  • SL2.40ch03:52872782-52873536
  • TTTTATTTA
  • TAGGGCAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
                   TTTTATT     C    TTCACATATA     CAAAAAATTCATATTTATATGTTATAGCAAAGTTTGCATAATTACGCTTTATAGCAAACATAAAACTGTATAATTCGCTATACATATACAATTGTATAATTCGCTGGCCTAAATTGTATAATTCGTTGGCCTATTTCCCTGCAATTGTATAATTCGCTATCCTATTTCATTGCGAATGTATAATGCACGTATAATTCGCTGCCTATTTCGCTGCAATTTTTTTATAAAATTTGCTTTGCATACAGTTGAATTGAATTAAAATGTATGTATATTGTATAATTATAAGTGTATAGCAAGAAGATATATATTTTTCTCTCGCTTTATACAAAAACAGAAACA
                          TAGGG AACT          GCAAA                                                                                                                                                                                                                                                                                                                                                   
                          ||||| ||||          |||||                                                                                                                                                                                                                                                                                                                                                   C
                          ATCCT TTGA          TGGAT                                                                                                                                                                                                                                                                                                                                                   
ATTTATTTTCTCTTTTAATATACATT     -    ------TTAT     TTTATTCATCTTATCCATTCCAAACTAAACTAACACGAGGTATCGTTTACAATCGATTTTAAACAGTCGCAGAGAGAGGGTCTTTAGAGCGAACGGTGAGAGGTAAGAGCGAGCGGAAAGAGCGAAATATGTTCTTCACATATTAATACAAAAACAAAACATATTTCGCTTTCTTTTAACATATATGTGTACGTTTTTATATATAAAAGCACAATATGTGAATTAATATGTTAAATGCTTGTTAAATGAAGTTTATAACGTCTCTTTTTCCGGTCGCTTAATATATTAACGTCACTTAATGTTAAAAGAGATCGAAATATGTTGTCTTCACATATATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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