Plant MITE

SE3710034

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11102
Solanum lycopersicum
SE3710034
Tc1/Mariner
St3
SL2.40ch06:21237647-21237898
TA
TACTCCCTCTATTTAAAAAGAATGACTTA

Secondary structure and sequence

TSD TIR

5'

3'

          A        -      -    -------------------       ----T   AACGA      T ------  AA A   AAGACTTTTTAATCTTATGATTCTAAATTAAAGTTATGTTAAATATACCAAA
TACTCCCTCT TTTAAAAA GAATGA CTTA                   GTTTGAC     TGA     AATTTA G      AA  G AAG                                                    
|||||||||| |||||||| |||||| ||||                   |||||||     |||     |||||| |      ||  | |||                                                    A
ATGAGGGAGG AAATTTTT CTTACT GGAT                   GTTTTAC     GGG     GAAAGG A      CG  T GCG                                                    
          C        T      A    AAAGAAAAAATTAAACAAA       TTACT   -----      - AAAAAT  -T -   AAATTGAAATTGAAAAGTGCATTGTACAAATTCTGGTGTTCTAATTTCCCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710034

TACTCCCTCTATTTAAAAAGAATGACTTAGTTTGACTTGAAACGAAATTTATGAAAAGAAAGAAGACTTTTTAATCTTATGATTCTAAATTAAAGTTATGTTAAATATACCAAAATGCCCTTTAATCTTGTGGTCTTAAACATGTTACGTGAAAAGTTAAAGTTAAAGCGTTGCTAAAAAAGGAAAGGGGTCATTCATTTTGAAACAAATTAAAAAAGAAATAGGATCATTCTTTTTTAAACGGAGGGAGTA

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