SE3720040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11108
  • Solanum lycopersicum
  • SE3720040
  • Mutator
  • M6
  • SL2.40ch09:63055586-63056296
  • TTTATTAAA
  • TTATTAAAGGGCAA

Secondary structure and sequence

TSD    TIR
5'



3'
T   T       C  CTTTCACATATAACAAACAAAAAATTCAT T        T         ---    CA AATTGCGCTCCATAGCAAACATAAAAATTGTATAATTCGCTATACATATACAAGTGTATAATTCGCTGGCCTAAATTGTATAATTCGCTGGCCTAAATTGTATAATTCGTTGGCCTATTTCGCTGCAATTGTATAATTTGCTTTGCATATAGTTGAATCGAATTAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATGTTTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTA
 TTA TAAAGGG AA                             A TTGTATAA ATAGCAAAT   TTTG  T                                                                                                                                                                                                                                                                                                           
 ||| ||||||| ||                             | |||||||| |||||||||   ||||  |                                                                                                                                                                                                                                                                                                            
 AAT ATTTCCC TT                             T AACATATT TATCGTTTG   ATTG  A                                                                                                                                                                                                                                                                                                           
A   T       -  ----------------------------- T        T         ATT    -- ATTTAATTTATCTTATCGATCCCAAACTAAATTAACACGAGGTATCGTTTGTAATAGATTTAAAACGGTCGCAGAGAGAGGGTCCTTAGAGCGAGCGGTGAGAGGTAAGAGCGAGCGGAGAGAGCGAAATATGTGTCTTCACATATTAAAACAAAGACAAAACATATTTCGCTCTCTTTAACATATATGTGTACGTTTTTACATATAGAAGCACAATATGTGAATTAATATGTTAAATGTTTGTAAGATGAAGTTTTTAACGTCTCTTTTTCCGGTTGCTTAATATGTTAACACTTAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End