SE3720041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11109
  • Solanum lycopersicum
  • SE3720041
  • Mutator
  • M3
  • SL2.40ch11:42535172-42535837
  • TTAATAAAA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
     TTAATAAA    AAAA    ----    -   G    AATAATAAATCAAATTCAATGTTATAACCATATTTTGATTTATTTGTGTTGTGTAGCAAACATTGTCACCTGTGTCCCTCAAACTCTCGCTCGCCACTCTCCCTCTCTCGCTCACTCCATCTCACTTTTATATAAACACAAATGTATAAAATGTATTTGTATTAACCGAAAAAAATTTGTATCTATACATATATTTTCATTCTCCTCTCCCAGATCTGCTCGCTACTCTCCCAGATTTGCTCACCACCCTCGCCTCTATCGCTTATACAAACAGAAACGAAATGTATAAATTATTTTT
             AGGG    TTGT    ATAT AAT ACAA                                                                                                                                                                                                                                                                                                          
             ||||    ||||    |||| ||| ||||                                                                                                                                                                                                                                                                                                           
             TTGA    AGTG    TGGT TGT GTTT                                                                                                                                                                                                                                                                                                          
AAAATAATTCTCG    ---A    TATA    A   -    TAAGCATAAACACACAATATCGTTTCAAATGTATTAACACGAGGTATCGTTTGTATTTATACATGTTAAGCGATATGTATTTGTTTCTTTGGTTAACATATTAAGCGATATGTATATTTTTTCTTTTGTCTTCATATGTTTAGTTAATATATTAAACACACGCATATTTTAATCTTTCTCTCTTTCTCCTTTTTTTAACTCGTCTATTTATAAATATAACATGTTAATATTCACATATCCTGCTTCTATATACATAAACGTACACATATATGTTAAAAGAGAACAAAATATGTTTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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