SE3720042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11110
  • Solanum lycopersicum
  • SE3720042
  • Mutator
  • M6
  • SL2.40ch10:62103415-62104106
  • TTAATTTTT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATTT   AATA      -A ATATAACAAACATAAAATTT      G      A   CAAAGTTTACATAATTGCGCTTCATAGAAAACATAAATATGTATAATTTTCTATACATATACAAATAAACCAATTGTATAATTCGCTATGCATATACAAAAGAAAGCAATTGTGTACAAATTAATTGGATAATTTGTGTATCTATAAAAAGAGAAAGAGAGAAAGACAAAAGAAAACTGGGCATGGGAATATTTGTATTATATAATTATAAGTGTATAGGACGAAAATATATGTATTTGCAAGTGTATATACAATTTTCTCTCACTTTATACAAACAGAAACACAGTTT
       TTG    ACTTTC  C                    ATATTT TATGCT CAG                                                                                                                                                                                                                                                                                                 
       |||    ||||||  |                    |||||| |||||| |||                                                                                                                                                                                                                                                                                                 A
       TTC    CCCTTT  C                    TTAGTT TAATTT ACG                                                                                                                                                                                                                                                                                                 
TTTTTAA   ----      AA ATATATTAACATTTGACTAT      -      -   ATATTGGTGTGAAATTAAATTAACATGAAACATCCTTTGACAAACAGCAGTGGAGAGAGGAAGTTTGAGAACGAACGGTGAGAGGGAAAGAGCGAGCGAGGGAGAGTGAAAATATGTTTGTGTTCACATATTTTACACAAAGACAAACATATTTCGCTCTTTTTTTAATATATCTATATGTATATAAAAGCAAGGGGAGAGAGGGGAGACGATCTAGAGCGAACGGGAAGAGAGTCTAGAGCGAACGGTGGGAGCGGAGATAGTGAATATGTTTGTCTTTGCTTTACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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