SE3720043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11111
  • Solanum lycopersicum
  • SE3720043
  • Mutator
  • M5
  • SL2.40ch05:11814497-11814811
  • TATGAAATT
  • GGGAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TATGAAATT        GGTC     T      G       ATC           AAC              GCAAA   C      -CC                      A                             T   AAA  ---    TA
         GGGAAAAA    TGAAA ATATTT AATTTTG   GAAATTGTTGT   GATGTCAAACTTTG     GAC TTTTAC   CCTGCACTATTTAATAGTGTAT TTAAAGGTATATATGTGTCCACGTGGACA CAT   TA   TATA  
         ||||||||    ||||| |||||| |||||||   |||||||||||   ||||||||||||||     ||| ||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||   ||   ||||   
         CCCTTTTT    GCTTT TATAAG TTAAAAC   CTTTAACAACA   CTATGGTTTGAAAT     CTG AAAATG   GGATGTGATAAATTATCACATA AATTTCCATATATACACAGGTGCACCTGT GTA   AT   ATAT  
TTAAAATAT        AGAA     T      A       CGA           ATT              ACTTC   A      TAA                      A                             -   ATG  AAA    TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End