SE3720045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11113
  • Solanum lycopersicum
  • SE3720045
  • Mutator
  • M6
  • SL2.40ch01:67755628-67756291
  • TTGAATTAT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGAAT    GGCATCTTTCACATATAGCAAACATAAAATTCATGTTTGTATGTTATAACACATTTTGCATAATTGCACTTCGTAGCAAACATGAATATGCATAATTTACTATACATATACAAAGAAATCAATTGTATAAGTCGTTATACATATAGAAAAAAAACAGTTGTATACAAATCAATTGTATAATTTGTGTATGCAAAAAACGAGAAAGAAACAGACAAAAGAAAATTAGGAAGGAAAATATTTGTATAGTATAATTATAAGTGTATAGGACGAAGATATATGTATTTGTAGGTGTAAATATAATTTTCTCTCGCTCTATATAAACAG
      TATG                                                                                                                                                                                                                                                                                                                                    
      ||||                                                                                                                                                                                                                                                                                                                                    A
      ATTA                                                                                                                                                                                                                                                                                                                                    
     T    AGTTCCCTTTTAACATATATTAGGATTTAATTATTTAGTTTAATTTACGATATTGGTGTGAAACTAAATTAACACGGGAAATCGTTTAACAAACAGTCAACGGAGAGAGGTAGTTTGAGAGTGAGTGATGAGAGCGAGAGAGCAAGCGAGGGAGAGTGAAATATGTTTGTGTTTACATATTTTACACAAACACAAACATATTTCGCTCTTTTTTAATATGTATATGTATATAAAAGCAAGAGGAGAGCGATGAGAGGGTCTAGAGCGAGTGGTAGGAGCGCAGATAGTGAATATGTTAATCTTTGCTTTACATATTTAACACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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