SE3730047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11115
  • Solanum lycopersicum
  • SE3730047
  • hAT
  • Hat5
  • SL2.40ch09:64643342-64643863
  • AATATCAC
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
AATATCACTAG  --  G   AAAATGAATCCAAACAAAGGTAACCCGCCTAGAATTTTAAGGGTTTGGGCTCAAAATAATTTGAATTGGGTTCAATCTCAACCAATTAAAGCTTAGCCCATTTGAAAAGAATTCTAAATTGAGTCTAATACAATCTCCAATTTCAACTCGTTTTAAAACTTTTTATTAAGATATTTTCTTGTATTGAATACATGAATTATTATCTATTTAACATCTTTTATGATTTATCTATCCATTTGTTACTTT
           GG  AT TCA                                                                                                                                                                                                                                                      
           ||  || |||                                                                                                                                                                                                                                                       
           CT  AA ATT                                                                                                                                                                                                                                                      
         CA  AT  -   CCCACAGTTTTACCCGCCCAACTTAAATTTTAACCTTTATAATTTTACCCAACTTATCTTTAGCCCAACCCAGAACTGGGCGGGTTCAAATGAAGCCCGAGTTTACCTAACCCGAGTTTACCCGATTTTTTTTCCCAACCCAGAACTGTGCGGGTTAAACTGGGCTAATTAAAGTTATTAAATTGATAACTATAAATTGAAAATATTAGTGTTAAACTTAAAAGGCGAGTTTTAAAAAAACAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3