SE3720050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11118
  • Solanum lycopersicum
  • SE3720050
  • Mutator
  • M7
  • SL2.40ch11:49424778-49425145
  • TTATTTCAA
  • AAGGAAAAATGACAGAAATCTTACCTTTAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTC    AA   T          --T   C      CTCTCTT         ATC     T   T       ATCC C           TTTTCAC   TCAAATTA   -   C    CAACAAATAAA    TCTCGCGCATCAGATTAGTGTGTCAGGTATAAAATGTATACCAGATTAGGGTATCA
       AAGG  AAA GACAGAAATC   TAC TTTAAG       GTTACCATT   CCCTT TAG TTTATAA    C AAAATCCCTTA       GCA        ATG TAT AGCG           TGTA                                                        
       ||||  ||| ||||||||||   ||| ||||||       |||||||||   ||||| ||| |||||||    | |||||||||||       |||        ||| ||| ||||           ||||                                                         
       TTCC  TTT CTGTTTTTAG   ATG AAATTC       TAATGGTAA   GGGAA ATT AAATATT    G TTTTAGGGAGT       TGT        TAC ATA TCGC           TGTA                                                        
AATTTTA    CG   C          TGT   A      --CATTT         ACA     T   C       -AAT T           TTGACTA   --------   T   T    ------AACTA    ATTAAACTACACGCTCTATGTAATTAGCAATTCATTCTATGTATTGTAAAATATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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