SE3750055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11123
  • Solanum lycopersicum
  • SE3750055
  • PIF/harbinger
  • To1
  • SL2.40ch06:45504401-45505033
  • TAA
  • GCTAGCGTTTGGTCATAGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
  TAA   AG                       ATTTTTGGTAAATATTATTTGAGTGAAAATTTGTGTACCATGTGTTTGGCCATAAAATTTGGGAAATATATTTCACCTTTTTAGAAAAATATGATTTATACACACAAGTTTTAAAAACTATCAAAACTAACTAAAAGTTTGTATTACAAGTCAATTGAATGTTAGTTACAACAATAACAAATAATGTCCATGACACTGAAGCAATGTGGTAATTTGGAGTGAGTGCAACAAGAATTATTCCATACATCGTGAAGTAGATAAAGTACATGACTTCGTTACCTAAAA
     GCT  CGTTTGGTCATAGATTCTCAAAT                                                                                                                                                                                                                                                                                             
     |||  |||||||||||||||||||||||                                                                                                                                                                                                                                                                                             C
     CGG  GCAAACCGGTATTTAAAGGTTTA                                                                                                                                                                                                                                                                                             
AATCC   --                       TTATAAACCTTTTTTAAACCGTTTATTACAAACAGGTATGTTAAACAGTAATAAACCGTTTATAGAGTTTAAAGGTTTATGATCAAAAAAGATCATAAACCCGGTTTATAGTAATAAACCCTATAAAATTTTTAATTTTAAAATAGGGTTAGAATGTTTTTGTGGGAGAGATCATAAACGAACGCAACATAATGTAGTAAAAAATGCACTTGTGGTTTTATCACTACTTTATAAATCACTTATAATTTATTACTATACTAACAACTACTTTTAATAATTTTTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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