SE3720056

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11124
  • Solanum lycopersicum
  • SE3720056
  • Mutator
  • M3
  • SL2.40ch12:36032462-36033149
  • TTTAATATA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
   TTTAATAT    -- AAAT   ACAA -       TAATAAATCAAATTAAA      AATCTCACTTTGATTTAATTGTGCCATGTAGCAAACTATTTGTCAATCACATCTCTCCCTCAAACTCTCGCTCGCCGCTCCCCTTGCTTTTATACAAACACAAATGTATAAAATGCATTTGTGTTTGTATAAAGCGAGACAAAATTCTATACATACATATATTTTCGTGTCCCTCTCCCAGATCTCGCTCGCCACTTCCGAGATCTCGCTCGTCGCGCTCGCATCTATCACTTATACAAACAAAAACAAAATGTATAAATTGTGTTTTGTTTGTATAAAGCGAGAGAAAATTGTATA
           AGGG  A    TGT    T GACAAAT                 TGTTAT                                                                                                                                                                                                                                                                                                         
           ||||  |    |||    | |||||||                 ||||||                                                                                                                                                                                                                                                                                                         T
           CGTT  A    AGT    G ATATTGT                 GTGTTT                                                                                                                                                                                                                                                                                                         
ATATAATTTCT    AA ----   ---- T       ---------------TT      TAAGTATAAACATACAATATCGTTTCAAACGTATTAACACGAGGTGTCGTTTGTATTTATACATATAAAACGATATGTATATGTTTTTTTGTCAACATATTAAGCGATATGTATATGTTTCTTTAGTTAACATATTAAGCAATATATATATTTTCTTTTATCAACATATGTTTATTAACATATTAAACACGTGCATATTTTGCTCTTTCTCTCTTTCTGTTTTATTTTAACCTGTTCCCGTATAAATAAACATGTTAATATTCACATATCCTGCTTCTATATATGTAAACGTACACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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