SE3720059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11127
  • Solanum lycopersicum
  • SE3720059
  • Mutator
  • M6
  • SL2.40ch08:57605044-57605769
  • TATAATTTA
  • TAATTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       -----     AAT       AATGGCAACCTAATGATTCAAATTAAATGTTATAACCAAACTCTGATTTAATTGTGTCATGTAGCAACCTGTTTGCCAGTCGTCTCTCTCCCTCAAACTCTCGCTCTCCCTCTCTCGCTTTTATACAAACACAAATGTATAAAATGTGTTTGTGTTTGTATATAGCGAGTGAAAATTGTATATATACATATATTTTTGTTCCCTCTCTTCCCTCTCCCAGATCTCGCTTGCCACTCTCCAGATCTTGCTCGTCACCATCCCAGATCTCAATCGTCACTCTCGTCTCTCTCGTTTATACAAACAGAAACGAAATGTATAAATTGCGTTTCAGTTTGTATA
  TAATTTA     GGGAA   TATATAT                                                                                                                                                                                                                                                                                                                                                   
  |||||||     |||||   |||||||                                                                                                                                                                                                                                                                                                                                                    
  ATTAAAT     ATTGA   AAGTGTA                                                                                                                                                                                                                                                                                                                                                   
         ATCTC     ---       TTTCGTTTGTATTTTTAGTATAAATATACAATATCAATATGAATATATTGATACAAAGTAGCGTTTGTATTTATATATTTAAAAAGATATGTATAATTTTTTTTGTCAGTGTATAAAGCAATATGTATGTGTTTCTTTAGTAAACATATTAAGTAATATGTATATGTTTTCTTTTATCAACATATGTTTTCTAGTTAACATATTAAACACATATTTTGCTCTTTTTTTATCTCTATTTTCTTTAACCCATTCCGGCATTCCTTTATAAATATAACATATTAATATTCACGTATCCTACTATACACATAAACGTACACATATATGTTAAAAGAGAGTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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