SE3720060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11128
  • Solanum lycopersicum
  • SE3720060
  • Mutator
  • M8
  • SL2.40ch02:29835792-29836189
  • AAGTATAAA
  • GGGAAACTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGTATAAA      C    --------ATACATATACTA      AAAAATATTTACCATTTATAGCAATAACAATTTTTTCACTTTATCACTTTTAGTACATTTACAATACACTTTTAATTCATATTACAAAAAACAATTTATTATTCACATAAAATACAAGTTTTTTTGATGGATCTCACATTTTTATACACTTATAATA
         GGGAAA TTAC                    TGAATA                                                                                                                                                             
         |||||| ||||                    ||||||                                                                                                                                                              
         CCTTTT AATG                    TTTATT                                                                                                                                                             
AAATATGAA      T    AACCTCCTTACAGAAAATTA      AATGACTAAAAACGTTATGTAAAATAAACAATAGTAAATATCGTTATGATACAATTTAGACGTTATACATAATTTTTACTTAATTCATACGTTATATATACATAATATTGATAAAATTTTTTATAAATGCAAACAAACCATTCTTCAATTGTGTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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