SE3720073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11141
  • Solanum lycopersicum
  • SE3720073
  • Mutator
  • M9
  • SL2.40ch01:64681968-64682283
  • AATAAATTT
  • TTGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATTTATGTCCTTCAACTTTGGGTGTGCACAAGTAAACACTTAAACTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAAAT               -AA  T    TTT               ----CAC    A  T           G GT           A      A    T  ATAAAG   AAC           CAT          T  TTTTTTGTCC       TG
       TTGGCATAATACATA   TA GCCC   AACTTGGCTTCGAAT       ATTT TG CCTTCAACTTT G  GTGCACAAGTA ACACTT AACT TC      TTG   AAATAGACATA   GTCCTACATG CA          TACGTGG  
       |||||||||||||||   || ||||   |||||||||||||||       |||| || ||||||||||| |  ||||||||||| |||||| |||| ||      |||   |||||||||||   |||||||||| ||          |||||||   
       AACCGTATTATGTAT   AT TGGG   TTGAACCGAAGTTTA       TGAA AC GGAAGTTGAAA T  TACGTGTTTGT TGTGAA TTGA AG      AAT   TTTATTTGTGT   CAGGATGTAC GT          GTGCATC  
TTTAAAT               ATA  C    -CT               AAATTTT    -  T           G AT           C      A    T  GTTGAA   GTA           ACT          T  -----TTTAT       CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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