Plant MITE

SE3710076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11144
Solanum lycopersicum
SE3710076
Tc1/Mariner
St3
SL2.40ch08:49309406-49309658
TA
TACTCCCTCCGTTTCAAAAAGAATAACCT

Secondary structure and sequence

TSD TIR

5'

3'

     C        C         A    ----A   T   --- - AGAACGGAGTTTAACAAAAGAAAGAAGACCTTTTAATCTTGTGTTTCTAAATTAAAGTTATGTCAAATGTACCAAAATAACCTT
TACTC CTCCGTTT AAAAAGAAT ACCT     GTT GAC   T T                                                                                    
||||| |||||||| ||||||||| ||||     ||| |||   | |                                                                                     
ATGAG GAGGCAAA TTTTTCTTA TGGG     GGA AAA   A A                                                                                    
     A        T         C    ATAAA   -   ATC G CAAAGTTGTTCTTACTATAGAAAGGAAAAAACCGTTGTGAAATTGAAATTGAAAAGTGCAACGTACAAATTCTGGTGTTCTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710076

TACTCCCTCCGTTTCAAAAAGAATAACCTAGTTTGACTTAGAACGGAGTTTAACAAAAGAAAGAAGACCTTTTAATCTTGTGTTTCTAAATTAAAGTTATGTCAAATGTACCAAAATAACCTTTAATCTTGTGGTCTTAAACATGCAACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGATATCATTCTTGTTGAAACAGACTAAAAAGGAAATAGGGTCATTCTTTTTTAAACGGAGAGAGTA

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