Plant MITE

SE3720081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11149
Solanum lycopersicum
SE3720081
Mutator
M2
SL2.40ch05:9959713-9960038
TTATTTATA
AGGGATAATGTCCAAGTACCTCCTCAATCTATGCCCGAAATCCCAGAGACACACTTATACTATATTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTCTACCCCTTTTCGGCCTACGTGGCACTATCTTGTGGGTCCAAC

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTAT           C                              C                                                       TAA             C    CG               TC   -----T     C   GA
        AGGGATAATGT CAAGTACCTCCTCAATCTATGCCCGAAATC CAGAGACACACTTATACTATATTAAGGTCCTATTACCCCCCTGAACTTATTTTAT   TAATTTTCTACCC TTTT  GCCTACGTGGCACTA  TTG      GGGTC AAC  
        ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||  |||||||||||||||  |||      ||||| |||   
        TCCCTATTACG GTTCATGGGGGAGTTAGATACGGGCTTTAG GTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAATA   ATTAAAAGATGGG AAAA  CGGATGCACCGTGAT  AAC      TTCAG TTG  
ATATTTAT           T                              A                                                       TTC             A    AA               CA   TTTTTT     -   GT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720081

TTATTTATAGGGATAATGTCCAAGTACCTCCTCAATCTATGCCCGAAATCCCAGAGACACACTTATACTATATTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTCTACCCCTTTTCGGCCTACGTGGCACTATCTTGTGGGTCCAACGATGGTTGACTTTTTTTTCAAACTAGTGCCACGTAGGCAAAAAAAGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGATTGAGGGGGTACTTGTGCATTATCCCTTATTTATA

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