SE3720082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11150
  • Solanum lycopersicum
  • SE3720082
  • Mutator
  • M6
  • SL2.40ch02:39082708-39083407
  • TAAAAAAAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAAAA AG AA   A  --  --   AACAA  ---     ATTTATATTTGTATGCTATAACAAAGTTTGCATAAATGCACTCCATAGCAAACATAAATATGTATAATTTGCTATACATATACAAAGAAATCAATTGTATAATTCGCTATACATATACAAAAGAAAGTAGTTGTATACAAATCAATTGTATAATTTATGAATGTATAAAATGAGAAAGAGAGAAAGACAAAAGAAAATTGGGCAGATAAATATTTGTATTGTACAATTATAAGTGTAAAGGACGAAGATATATGTATTTGAAAGTGTATATACAATTTTCTCTCACTTTATACAAACAGAAACACAATTTATAC
         G  C  CTT CC  CA  TAT     AT   ACAAA                                                                                                                                                                                                                                                                                                                          
         |  |  ||| ||  ||  |||     ||   |||||                                                                                                                                                                                                                                                                                                                           
         T  C  CCT TT  AC  ATA     TT   GTTAA                                                                                                                                                                                                                                                                                                                          
 AAAAAAAA -- --   -  TA  AT   -----  ACT     ATTATTTAATTTAATGAACAATATTGGTACGCAATTAAATTAATATGGGACATCGTTTGACAAACAGTCAGTGGAGAGGAGGAGTTTGAGAGCGAGCGGTGAGAGGGAGAGAGCGATGTAGAGAACGAGCGAGAGAGAGTGATAATATGTTTGTGTTCATATATTTTACACAAAGACAAACATATTTCGCTCTTTTTAAACATATACATGTATATAAAAACAAGGGGAGAGGGTATAGAGCGAGCGATCAGCGATGAGAGGGTCTAAAGCGAGCAGTGGGAGCGGAAATAGCAAATATGTTTGTTTTTGCTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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