SE3720086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11154
  • Solanum lycopersicum
  • SE3720086
  • Mutator
  • M7
  • SL2.40ch11:34992476-34992863
  • TTAATTTTA
  • AGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATTTT    AAAAT          C --  C      TTCTCTT         ATCCCCTATTAGT     TATTCCCCAAATTTCTCATTTTCATGCATCAGATTAATGTATCAACGCATCAAATTAATGTATATCGCGCATCAGATTATTGTTCTCGCCACCATATTAGTGTATCATGTATAAAATGCACATCA
        AGGG     GACAGAAATT C  AC TTTAAG       ATTATCATT             TTACA                                                                                                                             
        ||||     |||||||||| |  || ||||||       |||||||||             |||||                                                                                                                             G
        TCCC     CTGTCTTTAG G  TG AAATTC       TAATGGTAA             AATAT                                                                                                                             
ATTTTAAT    GTCTC          T TA  A      --CATTT         -------AAAAAG     TTAAATATTAATGTACTTAAGGAGTTTGACTATGTTATTATATTCGCGATTATGTAATTATAAATACACGCTCTATGTAATTAATAATTCATTCTATGTAATGTAAAATATATATTATGTGGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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