SE3710087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11155
  • Solanum lycopersicum
  • SE3710087
  • Tc1/Mariner
  • St3
  • SL2.40ch07:18890-19144
  • TA
  • TACTCCCTCTGTTTCAAAAAAAATGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
                    AA      CTATTTC   TTTAGTCTGTTTCAAAAAGAATGACCCCTTTCCTTTTTTTGGCAACACTTTTAACTTCAAATTTCCACGTGACATGTTTAACACCACAA
TACTCCCTCTGTTTCAAAAA  ATGACC       CTT                                                                                         
||||||||||||||||||||  ||||||       |||                                                                                         G
ATGAGGGAGGCAAAGTTTTT  TACTGG       TGA                                                                                         
                    CC      ATCAAAC   ACCTTGCCTCAAATTCTTTTCTTTCTTCTGAAAAATTAGAACACCATGATTTAATTTCAATACAGTTTACATGGTTTTACGGGAAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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