Plant MITE

SE3750088

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11156
Solanum lycopersicum
SE3750088
PIF/harbinger
To4
SL2.40ch01:9824793-9825184
TTA
AGAGCCTGTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TT  A          CT   - - TAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGCTATTTGGCAATACTCAAAATAACTTATTTTAAGTTTAAAAAAACTTATTTTAAGCCAAAAGTTAATGGTTTGGGTAGGGATGCTTTTTTTTTAGCTTGTAAGCTGTTTTAAGTTGAAAATATTTT
  AG GCCTGTTTGG  CAG C T                                                                                                                                                                             
  || ||||||||||  ||| | |                                                                                                                                                                             T
  TC CGGGCAAACC  ACC G A                                                                                                                                                                             
AT  C          -T   T A TCATTTTAGTCGAAATTTTTTCATGAAAACTTTCACCACTTTGAATAAAAATTTTATTCGACAATCACGACTTCAACGATACGGTTTGCACTTTTCCCTTTTTACCTTCTTTCTCTACAATCCCAATACACCCATAAAACCTCTCACATATTTTTATAATTCCCATTTTTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750088

TTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGCTATTTGGCAATACTCAAAATAACTTATTTTAAGTTTAAAAAAACTTATTTTAAGCCAAAAGTTAATGGTTTGGGTAGGGATGCTTTTTTTTTAGCTTGTAAGCTGTTTTAAGTTGAAAATATTTTTATCTTTTTACCCTTAATATTTTTATACACTCTCCAAAATACCCACATAACCCTAACATCTCTTTCTTCCATTTTTCCCTTTTCACGTTTGGCATAGCAACTTCAGCACTAACAGCTTATTTTAAAAATAAGTTTCACCACTTTCAAAAGTACTTTTTTAAAGCTGATTTTACTAAGTCCATCCAAACGGGCCCTTA

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