SE3720090

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11158
  • Solanum lycopersicum
  • SE3720090
  • Mutator
  • M3
  • SL2.40ch06:44706550-44707336
  • ATTAATTAA
  • TTAATTAAGGGAAAATTGTTTATAATAATAAATTAAAAATC

Secondary structure and sequence

TSD    TIR
5'



3'
A        -   AA    G      -         T      - TAAAATAAATAAA     TAT      A T     A         A       ------------T   CAAAG  -  TC -  CGCCTCTCTTCCAAAAATCTCGCTCGTCACTTTTCCATTCTCGCTCGCCACACTCCCTCTGCTCGCCCCTCTTGCTTTATACACAGAAGTGTATAAATTTTGTTTCTGTTTTGTATAAAGCGAGACAAAATTGTATATACACATGCAAAAACATATATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAATTCAATTGTAGACAAACGCAAATTTTATACAAATATTGCAAAGAAAAAGGTCAACGAATTATACAATTGTGA
 TTAATTAA GGG  AATT TTTATA ATAATAAAT AAAAAT C             GTAAT   GGTTTG T TAATT TGCTCCATA TAAATGT             AGC     TT TG  A GA                                                                                                                                                                                                                                                                                      
 |||||||| |||  |||| |||||| ||||||||| |||||| |             |||||   |||||| | ||||| ||||||||| |||||||             |||     || ||  | ||                                                                                                                                                                                                                                                                                       
 AATTAATT CCC  TTGA AAGTGT TATTGTTTG TTTTTA G             TATTG   TCAAAC G ATTAA GCGAGGTAT GTTTGTA             AGC     GA TG  G TT                                                                                                                                                                                                                                                                                      
         A   -G    -      A         T      A TATAAACATACGA     -TT      - T     C         C       TTTTAACATATTA   -----  C  -- A  TAACATATTAAGCGACCGGATAAAGCGACGTTAACATATTAAGCAATAGGATAAATTGATGTTAACATATTAAGCGACGGATAAAGCGACGTTATAATAATATTTTAAACGAAACGTATATTAACTTGGCTTAATTTTACATACATATAACGTATTAATATTCACATATCGTTATTCTATATACAAAAAGAGAGCGAAATATGCTTTTATCTTTGTGTTATATATGTGAAGACAATATATTTCGATCTCTTTTAACATAAAGTGACGTTAACATATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End