SE3730092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11160
  • Solanum lycopersicum
  • SE3730092
  • hAT
  • Hat8
  • SL2.40ch11:1631978-1632181
  • TGCTCAAG
  • CTCAAGCAGAGGCGGAGCCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG  CA    --GA          AA  TTTTGATAA        AAA    AAGAAATAGACATACGAA    CT  AGGAGATTCAACATCTACTATATATACATAAAAGATT
  CT  AGCA    GGCGGAGCCA  AT         GGGGTTCA   TCTG                  ATAG  GA                                     
  ||  ||||    ||||||||||  ||         ||||||||   ||||                  ||||  ||                                     A
  GA  TCGT    CCGCCTCGGT  TA         CCCCAAGT   AGGC                  TGAG  GG                                     
    AC    GACA          GG  -TACAAATC        ---    -----------------A    --  AAACCAACTTTTAATATAATAAAAATATACCAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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