SE3720093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11161
  • Solanum lycopersicum
  • SE3720093
  • Mutator
  • M6
  • SL2.40ch08:61924664-61925364
  • AAGAAACAG
  • TTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGAAACAGGGGCAA         ATA        AAAACTCATATTTGTATGTTACAACAAAGTTTGTATAATTGTGCTCTATAGCAAACATACATATGTATAATTCGCTATACATATATACAATTGAAGCGAATTGTATAAAACGAGAAAGAGAAAGAGACTTTGACAGAAAATTATATAAAACGAAGTATATAACACAAAGTGTATAAAACGAGTTGTATAATTATAAGTGTATAGGATGATTATATACAATTTGAATTTGTATAAAATGAGAAAGAGAGAAAGACAAATGAGACTTGGGCAGAGATTATACAATTGAATTGACTTGTATAAAACGAGAAAGAGAGAAATTATA
               TTTTCACAT   GCAAATAT                                                                                                                                                                                                                                                                                                                                  
               |||||||||   ||||||||                                                                                                                                                                                                                                                                                                                                   
               AGAAGCCTA   TTAATATA                                                                                                                                                                                                                                                                                                                                  
          TACAA         ---        TCTTACTTTTTGATTAATATATTTTATTTATATCATCGATAGCAAACTAAATAAACATAAAGTATCTTTGATAAACAGTCATACAGAGAGGGAGTACAAGAGCGAACGGTGAGAGGGGGAGAGAGCGAGCGGAGAGAGCGAAATATGTTATCTTAACATATTTAACACAAAGATTAACATATTTCGCTCCCTTTTAACATATATGTATACGTTTATGTATATAAAAACAGGTTATGTGAATACTAATATGTTATTTTCATGAGCGGACGATTTCAGAGAAAAAGGAAAGAGAGAAAGAGCAAAATATGTTTAAGTTTAACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3