SE3730098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11166
  • Solanum lycopersicum
  • SE3730098
  • hAT
  • Hat9
  • SL2.40ch12:1187071-1187584
  • ATTTATAT
  • TATATCAGTGTTTTCCAAAACGTT

Secondary structure and sequence

TSD    TIR
5'



3'
ATT  T           CC    C   ----TTTA       -------------T   ---      AATTTTTGGGCGGAGCGTTCAAAATCGCTCTGAGGCGTAAATTAAAAACGTAGATCCATAAGGCATAAGTCCTAAAATTTGAGGCATAAGCCCTGGACATAAAAACGTAGGTTTTGAGCGTAAAAACGTACGCCCGGACGTTTTTAATGTATATTTTTGATTTTTGTTGGCTTTAAATCACATTTTTATTATTGATGTAA
   TA ATCAGTGTTTT  AAAA GTT        GGGCGAG              CTC   AGGGCG                                                                                                                                                                                                        
   || |||||||||||  |||| |||        |||||||              |||   ||||||                                                                                                                                                                                                         
   AT TAGTCACAAAA  TTTT CGA        TCCGCTC              TAC   GCTCCG                                                                                                                                                                                                        
TAT  T           --    C   CCCCACAC       CGCAAAATATGTCA   TCC      CATTCGGAGCTCTGTGCCCCGCATTTAGTGTACTTACATGCCCCGTATCAGCGTACATTTGAAAAGTTAAAATATTAAAATAATGATTATTTTATTCGTTTTCATTTGAAAAGTTATTTAATACTAAAAATACACTCTATTTAACAATTATAAATTATTACTTCTTTTTTCCTAATAGTAATAATAAACTCTTTATAGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End