SE3710099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11167
  • Solanum lycopersicum
  • SE3710099
  • Tc1/Mariner
  • St3
  • SL2.40ch09:11387587-11387842
  • TA
  • TACTCCCTCCGTTTCAAACAGGATGACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
              C   CA         ---A       TT  AACGGAGTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGTTCTAAATTAAAGTTCTGTCAAATGTACTAAAATGCCCTTTAATC
TACTCCCTCCGTTT AAA  GGATGACCT    GTTTGAC  GG                                                                                      
|||||||||||||| |||  |||||||||    |||||||  ||                                                                                      A
ATGAGGGAGGCAAA TTT  CTTACTGGG    AGGAAAA  AT                                                                                      
              A   TA         ATAA       --  CAAACAAAGTTTTTCTTACTGGGAAAAGAAAAAACCGTTGTGAAATTGAAATTGAAATTGAAAGGTGCACGAACAAATTCTGGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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