Plant MITE

SE3710100

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11168
Solanum lycopersicum
SE3710100
Tc1/Mariner
St1
SL2.40ch07:63277333-63277596
TA
TTCCTCCGTCCATTTTTATTTGTCATA

Secondary structure and sequence

TSD TIR

5'

3'

TAC         CC     T          TTACG      AAA       ---    TTAATTTTCAAAGTTTAAATTAGATTATAGAGTTTGATATTTTAAACAAAATATATAGATATTCAAAAACTATACAA
   TTCCTCCGT  ATTTT ATTTGTCATA     TTTTTC   AGTCAAT   TTAA                                                                             
   |||||||||  ||||| ||||||||||     ||||||   |||||||   ||||                                                                              
   AGGGAGGCA  TAAAA TAAACAGTAT     AAAAAG   ATCTCAG   ACTA                                                                             
ATA         AA     T          --TAA      -AA       TTT    TTTTCAAAACTAATTATAAAATACTTAAATAAAAAAGTAGTATGTCTATACGGTTTTTAACAATAAATATCATGAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710100

TACTTCCTCCGTCCATTTTTATTTGTCATATTACGTTTTTCAAAAGTCAATTTAATTAATTTTCAAAGTTTAAATTAGATTATAGAGTTTGATATTTTAAACAAAATATATAGATATTCAAAAACTATACAAAGAGTACTATAAATAACAATTTTTGGCATATCTGTATGATGAAAAAATAAATTCATAAAATATTAATCAAAACTTTTATCATTTGACTCTAAAGAAAAAAATTATGACAAATTAAAATAAACGGAGGGAATA

Copy Cancel