SE3710102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11170
  • Solanum lycopersicum
  • SE3710102
  • Tc1/Mariner
  • St1
  • SL2.40ch10:52041127-52041389
  • TA
  • TACTCCCTCCGTCCGAAATTGTTTGTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
               AA             TTGCGCTT    AAAGTAAATTTGACTAATTTTCAAAGTTAAATAAGATCACATTAATTCGATATTTTTAACAAAAAAATTTAGATATTCTAAAACTATATAAA
TACTCCCTCCGTCCG  ATTGTTTGTCATG        TTTG                                                                                            
|||||||||||||||  |||||||||||||        ||||                                                                                             
ATGAGGGAGGCAGGC  TAACAAACAGTAC        AGAT                                                                                            
               CA             -----CAA    AAAAATCTCAGTTTGATATTTTTGTAAATGATTGTAAAATTCGATATAAAAAAGTAGTATAATTATACGTTTTTAACGTTAAATATCATGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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