Plant MITE

SE3720105

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11173
Solanum lycopersicum
SE3720105
Mutator
M6
SL2.40ch01:66840608-66841272
TTGTTTAAT
T

Secondary structure and sequence

TSD TIR

5'

3'

         AATGGGCAACTTTCACATATAACAAACATAAAATTCACATTTGTGTATAGCAAAGTTTGTATAATTGCGCTCCATAGCAAATTTATATGTGTATAATTCGCAATACATATACAATTGAAGCGAATTTTACAAAACGAATTGTATAAAACGAGAAAGAGATAAATTATACAATTTGAATTGTATAAAACGAGAAAGCGAGAAAGGCAGAATTGAATTGTATAAAATGAGAAAAAGAGAAAGATAAAAAGAGACTTGCGCAGGGAATATACAATTGAATCGAATTGTATAAAACGAGAAAGAGAGAAATTATTTACAATTTAAATTT
   TTGTTT                                                                                                                                                                                                                                                                                                                                     
   ||||||                                                                                                                                                                                                                                                                                                                                      
   TTTGTT                                                                                                                                                                                                                                                                                                                                     
TAA      CCCTATTAACATATTTTACTGTTTGATTATTATAATTTATTTATATCATCGATAGGAAACTAAATAAACACAAGGTATCGTTTGACAAACAGTCAGGAATAGAGGTAGTATAAGAGCAAACAATGAAGGGAGAGAGCGAGCAAAAGACGTCGAGCGGAGAGAGCGAAATATGTTATCTTAACATATTTAAAACAAAGATTAACATATTTCGCTCTCTTTTAACATATTTGCGTACGTTTATGCATATAGAAGCAGGATATGTGAATATTAATATATTATGTTTATAAAGGGACGGGTTCAGAGAAAACGGAAAGGGCAAAATATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720105

TTGTTTAATGGGCAACTTTCACATATAACAAACATAAAATTCACATTTGTGTATAGCAAAGTTTGTATAATTGCGCTCCATAGCAAATTTATATGTGTATAATTCGCAATACATATACAATTGAAGCGAATTTTACAAAACGAATTGTATAAAACGAGAAAGAGATAAATTATACAATTTGAATTGTATAAAACGAGAAAGCGAGAAAGGCAGAATTGAATTGTATAAAATGAGAAAAAGAGAAAGATAAAAAGAGACTTGCGCAGGGAATATACAATTGAATCGAATTGTATAAAACGAGAAAGAGAGAAATTATTTACAATTTAAATTTGTATAAAACGGGAAAGGCAAAAGAGACTTGGGCAGGGAAATATTTGTATTATATAATTATAAGTGTATAGGACGAAGATATACGTATTTGCATGCGTTTATACAATTTTCTCTCGCTTTATACAATTAGAAACAAAATTTATACAATTCTATTGTATAAAGCGAGAGAGGCGAGCTGCAGAAAACGAGCGAGAGAGGGAAGTAACAAACGAGAATATGATGGAGATAAGGACTGACAAACAGTTTGCTATGGAACACAAATAAATCAAAGGATAGCTACTATATTTATTTAATATTATTAGTTTGTCATTTTATACAATTATCCCTTGTTTAAT

Copy Cancel