SE3720106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11174
  • Solanum lycopersicum
  • SE3720106
  • Mutator
  • M3
  • SL2.40ch10:20966255-20967014
  • TAGTTAAAA
  • AGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGTTAAA    -CAACTTTCACAT         A  A    CATATTTGT   TT     -AAT     -CA      C                AAAA      AATTCGCTATACATATACAATTGTATAATTCGCTGGCCTGAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTCGCTATCCCATTTCACTGCGATTATATAATGCACAATTGTATAATTCGCTGCCTGTTTCGCTGCAATATTGCTTTGCATACAGTTGAATCAAATTAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTT
        AGGG             ATAGCAAAC AA AATT         ATG  ATAGC    GTTTG   TAATTG GCTCCATGGTAAATAT    GTGTAT                                                                                                                                                                                                                                                                                     
        ||||             ||||||||| || ||||         |||  |||||    |||||   |||||| ||||||||||||||||    ||||||                                                                                                                                                                                                                                                                                      
        TCCC             TATCGTTTG TT TTGG         TAT  TATCG    CAAAC   ATTAAC CGAGGTATCGTTTGTA    CGATTT                                                                                                                                                                                                                                                                                     
AAAATTGA    TTTTAACATATAT         A  A    -ATTTTATT   CT     ATCC     TAA      A                --AT      TAAAAGGTCGCAGAGAGAGGGTCTTTAGAACGAGCGGTGAGAGGTAAGAGCGAGGGGAGAGACGAAATATGTGTTTTCACATATTAAGACAAAGACAAAACATATTTCGCTCTCTTTCCACATATATGTGTACGTTTTTATATATAGAAGCACAATATATGAATTAATATGTTAAATGTTTGTAAAATGAAGTTTATAACGTCTCTTTTTCCAGTTGCTTATTATGTTAACGCTTAATATGTTAACGTGACTTTATGTTAAAAGAGATCGAAATATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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