SE3710108

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11176
  • Solanum lycopersicum
  • SE3710108
  • Tc1/Mariner
  • St3
  • SL2.40ch04:16201264-16201516
  • TA
  • TACTCCCTCTGTTTAAAAAAGAATGACTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
              A      A     T   TTTTC     --  TCTGTTTAAAAAAGAATGACCTCTTTCATTTTCTGGTAACACTTTAACTTTAACTTTTCACGTGACATGTTTAAGACCACAAG
TACTCCCTCTGTTT AAAAAG ATGAC CTA     TTTTT  AA                                                                                   
|||||||||||||| |||||| ||||| |||     |||||  ||                                                                                    
ATGAGGGAGGCAAA TTTTTC TACTG GAT     TGTAC  TG                                                                                   
              G      C     -   CAAAT     CT  TTTCAAATTCTATTCTTTCTTCCGAAAAATTAGAACACCAAGATTTAATTTCAATACAGTTTATATAGTTTTACAGGAAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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