SE3720111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11179
  • Solanum lycopersicum
  • SE3720111
  • Mutator
  • M7
  • SL2.40ch12:7603070-7603439
  • TCTTTTTAT
  • GGGCAAAAGACAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTTTTTAT   C    -        TCACATA     GA     -------     -  AT           -AAG       -TTA A           -------------        CAATAACATAAGAGCTGATACATTA    GATTTGCGAGATACATTAATCATTAAGTAAGATACATTACATTTTATACATCATATACTA
         GGG AAAA GACAAAAA       CTTTT  TGCAA       AATTA CA  TTGTCCCTTAT    TTTATAA    C GAAATTTCTCA             AATTGATA                         ATCT                                                            
         ||| |||| ||||||||       |||||  |||||       ||||| ||  |||||||||||    |||||||    | |||||||||||             ||||||||                         ||||                                                             
         CCC TTTT CTGTTTTT       GAGGG  ATGTT       TTAAT GT  AGCAGGGGATA    AAATGTT    G TTTTAAAGAGT             TTAATTAT                         CACG                                                            
TATTTTTTT   -    A        ----TTA     -G     CAAGAGA     A  --           ATTA       TAAG G           AAAAAAACGAAGT        --------------------ATAGT    TAGTCTAATTACATAGAGCGTGTAGTTTAATCATATAGTACACATTTTACATGTAGTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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