SE3740127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11195
  • Solanum lycopersicum
  • SE3740127
  • CACTA
  • Ca2
  • SL2.40ch12:47462356-47462569
  • TAC
  • CACTACAGCAAAAATAACTATTAGCGACATTTAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC        C          A      A    T    CTT         --  ---  TATGTATTTTTAGCGGCAATTGTCACTCTTTGTATATGTCCATAAACCCT
   CACTACAG AAAAATAACT TTAGCG CATT AATT   AATTGTCGT  TA   AA                                                  
   |||||||| |||||||||| |||||| |||| ||||   |||||||||  ||   ||                                                  T
   GTGATGTT TTTTTATTGA AATCGC GTAA TTAA   ACTGTAATT  TT   AC                                                  
CAT        A          A      C    -    -TA         AT  CTC  GATTTCAAAAATAGCCGTAATCAATTCACAGTAATCTTGATTACAGTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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